Jason Papin headshot
JP

Jason A. Papin

Professor
Unit: School of Medicine
Department: Department of Biomedical Engineering
Office location and address
415 Lane Rd
Charlottesville, Virginia 22903
Education
PhD, University of California, San Diego
Multi-scale model of microbial phenotype modulation by mucins
Source: U.S. NIH Institute of Allergy & Infectious Disease
June 01, 2020 – May 31, 2025
The Integrated Translational Health Research Institute of Virginia (iTHRIV): using Data to Improve Health KL2
Source: U.S. NIH Center for Advancing Translational Scienc
February 27, 2019 – January 31, 2024
Systems biology of microbe-mediated glucosinolate bioconversion in inflammatory bowel disease
Source: U.S. NIH Center for Complementary and Integrative
September 20, 2018 – August 31, 2022
MD-BIOM Transdisciplinary Big Data Science Training at UVa
Source: U.S. NIH Library of Medicine
April 01, 2016 – June 30, 2021
MD-BIOM Network Models of Rat Liver and Kidney Metabolism for Toxicology Predictions
Source: U.S. DOD - Army - Medical Research Acquisition Act
February 01, 2014 – December 31, 2019
MD-BIOM Mapping and predicting metabolic fluxes between the ileal microbiome and host
Source: U.S. NIH Institute of General Medical Science
January 15, 2014 – December 31, 2018
MD-BIOM Metabolism of Microbial Persister Cells
Source: Unilever UK Central
April 14, 2015 – December 31, 2018
Network Analysis of Pathogenicity in Pseudomonas aeruginosa
Source: U.S. NIH Institute of General Medical Science
August 20, 2010 – December 31, 2015
MD-BIOEM Systems Analysis of Burkolderia Cenocepacia in polymicrobial disease
Source: Cystic Fibrosis Foundation
April 01, 2010 – March 31, 2013
BME 4550: Special Topics in Biomedical Engineering
Credits: 3
Applies engineering science, design methods, and system analysis to developing areas and current problems in biomedical engineering. Topics vary by semester. Recent topics include Medical Imaging Systems Theory, BME Advanced Design, BME Electronics Lab, and Systems Biology Modeling and Experimentation. Prerequisite: third- or fourth-year standing and instructor permission.
BME 4995: Biomedical Engineering Advanced Projects
Credits: 1–3
A year-long research project in biomedical engineering conducted in consultation with a department faculty advisor; usually related to ongoing faculty research. Includes the design, execution, and analysis of experimental laboratory work and computational or theoretical computer analysis of a problem. Requires a comprehensive report of the results. Prerequisite: third- or fourth-year standing, and instructor permission.
BME 6056: Going Pro, Professional Development in Biomedical Engineering
Credits: 1–2
A professional development course for biomedical engineering graduate students.
BME 6310: Computation and Modeling in Biomedical Engineering
Credits: 3
The principle objective of this course is to instruct graduate students on fundamental mathematical, modeling, and computational principles of relevance in biomedical engineering. The course is structured to provide lecture material, biomedical examples that use modeling and computation, and homework/exams that strengthen the mathematical and computational foundation of the graduate students. Prerequisites: 1. BME 6101: Physiology I (or equivalent) 2. SEAS grad student status 3. Some previous exposure to probability-statistics, Fourier analysis, and linear systems 4. Or instructor permission
BME 6315: Systems Bioengineering
Credits: 3
Introduces techniques for constructing mathematical and computational models of biological processes at many levels of organizational scale from genome to whole-tissue. Topics include choice of techniques, quantitative characterization of biological properties, assumptions and model simplification, parameter estimation and sensitivity analysis, model verification and validation and integration of computational modeling w/experimental approaches. Prerequisites: BME 6101, and BME 2104 or BME 7806 (or equivalent).
BME 8315: Systems Bioengineering and Multi-Scale Models
Credits: 3
In this course students will gain working knowledge of constructing mathematical and computational models of biological processes at many levels of organizational scale from genome to whole-tissue. Students will rotate through several modules where they will hear lectures, read literature, and participate in discussions focused on the various modeling techniques. Prerequisites: BME 6101/6102: Physiology (or equivalent); 2. One of the following courses in cellular and/or molecular biology: BME 2104: Cell and Molecular Biology for Engineers, BME 7806: Genetic Engineer.
BME 8995: M.E. Supervised Project Research (M.E. STUDENTS ONLY)
Credits: 1–6
FOR M.E. STUDENTS ONLY. A research project in biomedical engineering conducted in consultation with a faculty advisor. Includes the design, execution, and analysis of experimental laboratory work and computational or theoretical computer analysis of a problem. Fulfills the project requirement for the Biomedical Engineering Masters of Engineering degree. Prerequisites: Instructor Permission Required.
BME 8999: Master's Research
Credits: 1–12
Master's Research
BIOC 9995: Topical Research: Biochemistry and Molecular Genetics
Credits: 3–12
Topical Research
BIOC 9998: Non-Topical Research: Preparation for Doctoral Research
Credits: 1–12
Non-Topical Research: Preparation for Doctoral Research
BIOC 9999: Non-Topical Research
Credits: 1–12
For doctoral dissertation, taken under the supervision of a dissertation director.
MICR 9999: Non-Topical Research
Credits: 1–12
For doctoral dissertation, taken under the supervision of a dissertation director.
BME 9999: Dissertation
Credits: 1–12
Formal record of student commitment to doctoral research under the guidance of a faculty advisor. May be repeated as necessary.
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